Abstract:The aim of this study is to screen the specific adaptor of Cronobacter sakazakii for future development of rapid detection technique. Based on comparative genomics analysis of C.sakazakii strains, protein sub cellular localization prediction and protein trans membrane regions prediction, genes mRNA expression level assay, gene clone and protein over expression, certain outer membrane protein was selected and prepared as target protein for adaptor screening. Subsequently, purified target outer membrane protein was bound to carboxyl magnetic beads to screen ssDNA adaptor. The binding affinity of adaptor to target protein and capture specificity for C.sakazakii strain were assayed. It was demonstrated that adaptorS1 presented relatively high affinity with target protein and high capture capability for C.sakazakii strain. Predicted secondary structure of S1 and S2 revealed that loop and hairpin existed generously in these adaptors.
[1] Hunter CJ, Petrosyan M, Ford HR, et al.Enterobacter sakazakii: an emerging pathogen in infants and neonates[J]. Surg Infect, 2008, 9(5) :533-539. DOI:10.1089/sur.2008.006 [2] Mullane NR, Iversen C, Healy B,et al.Enterobacter sakazakii an emerging bacterial pathogenwith implications for infant health[J]. Minerva Pediatr, 2007, 59(2) :137-148. [3] Skovgaard N.New trends in emerging pathogens[J]. Int J Food Microbiol, 2007, 120(3): 217-224. DOI: 10.1016/j.ijfoodmicro.2007.07.046 [4] Willis J, Robinson JE.Enterobacter sakazakii meningitis in neonates[J]. Pediatr Infect Dis J, 1988, 7(3):196-199. [5] Gurtler JB, Kornacki JL, Beuchat LR.Enterobacter sakazakii: a coliform of increased concern to infant health[J]. Int J Food Microbiol, 2005, 104(1): 1-34. DOI: 10.1016/j.ijfoodmicro.2005.02.013 [6] Tang XM, Zheng J, Yan Q, et al.Selection of aptamers against inactive Vibrio alginolyticus and application in a qualitative detection assay[J]. Anal Biochem,2013, 434(1):146-152. DOI: 10.1007/s10529-013-1154-1 [7] Wang P, Kristen LH, Jason CB, et al.Selection and characterization of DNA aptamers against PrPSc Expeeriimental[J]. Biol Med,2011, 236(4) : 466-476. DOI:10.1258/ebm.2011.010323 [8] 曾艳丽,兰小鹏. 灭活铜绿假单胞菌适体的筛选[J].中国生物化学与分子生物学报,2009, 25(1): 90-97. [9] 江丽,兰小鹏,曾燕丽,等.用SELEX技术筛选葡萄球菌肠毒素B特异性适配体[J].临床检验杂志,2009, 27(6): 420-421. [10] Cui JH, Du XL, Liu H, et al.The genotypic characterization of Cronobacter spp.isolated in China[J]. PLoS One,2014, 9(7): e102179. DOI:10.1371/journal.pone.0102179 [11] Andrea M,Roger S,Claudia Fricker- Feer et al. Genetic diversity of Cronobacter sakazakii isolates collected from a swiss infant formula production facility[J]. J Food Prot, 2013,76(5): 883-887. DOI:10.4315/0362-028X.JFP-12-521 [12] ZiSS, Zhongq,LaiW, et al. Immunomagnetic nanobeads based on a streptavidin-biotin system for the highly efficient and specific separation of Listeria monocytogenes[J]. Food Control, 2014, 45(11) : 138-142. DOI:10.1016/j.foodcont.2014.04.036 [13] XiongQR,CuiX, Jasdeep KS, et al. Development of an immunomagnetic separation method for efficient enrichment of Escherichia coli O157:H7[J]. Food Control, 2014, 37(3): 41-45. DOI:10.1016/j.foodcont.2013.08.033 [14] Ellingtin AD and Szostak JW. In vitro selection of RNA molecules that bind specific ligands[J]. Nature,1990 (346): 88. DOI: 10.1038/346818a0 [15] Famulok M.Oligonucleotide aptamers that recognize small molecules[J]. Curr Opin Struct Biol, 1999 (9): 324-329. DOI: 10.1016/S0959-440X(99)80043-8 [16] Osborne SE and Ellington AD. Nucleic acid selection and the challenge of combinatorial chemistry[J]. Chem Rev, 1997(97): 349-370. DOI: 10.1021/cr960009c [17] Seung Soooh, Kareem M Ahmad, Minseon Cho, et al.Improving aptamer selection efficiency through volume dilution, magnetic concentration and continuous washing in microfluidic channels[J]. Anal Chem, 2011, 83(17): 6883-6889. DOI:10.1021/ac201269f [18] Ara MN, Hyodo M, Ohga N, et al. Development of a novel DNA aptamer ligand targeting to primary cultured tumor endothelial cells by a cell -based SELEX method.[J] PloS One, 2012, 7(12):e 50175. DOI:10.1371/journal.pone.0050174 [19] Avci-Adali M, Wilhelm N,Perle N, et al.Absolute quantification of Cell-Bound DNA aptamers during SELEX[J].Nucleic acid Therapeutics, 2013,7(12):125-130. DOI:10.1089/nat.2012.0406 [20] 陈文学,张焜和,邹学森,等.SELEX法筛选鼻咽癌核酸适配子的研究[J].山东医药,2012 (23):31-33. [21] Ashley J, Li S F, et al.Three-dimensional selection of leptin aptamers using capillary electrophoresis and implications for clone validation[J].Anal Biochem, 2013,434(1):146-152. DOI: 10.1016/j.ab.2012.11.024 [22] Tang XM, Zheng J, Yan QP, et al.Selection of aptamers against inactive Vibrio alginolyticus and application in a qualitative detection assay[J]. Anal Biochem.2013, 434(1):146-152. DOI: 10.1007/s10529-013-1154-1 [23] Ping Wang, Kristen L Hatcher, Jason C Bartz, et al.Selection and characterization of DNA aptamers against PrPSc Expeeriimental[J]. Biol Med, 2011(236): 466-476. DOI: 10.1258/ebm.2011.010323